ACMG Secondary Finding (SF) Genes

The American College of Medical Genetics and Genomics (ACMG) has compiled a list of SF genes, for which specific mutations are known to be causative of disorders with defined phenotypes that are clinically actionable by an accepted intervention. The ACMG recommends that variants detected in any of these genes by a method such as whole exome or whole genome sequencing be reported, as they are of medical relevance and could be used in the future to inform clinical treatment.

The NIGMS Repository has many samples bearing characterized mutations within the genes on this list. These samples serve as a resource to investigators studying these common variants in clinically significant genes.  Please use the table below to browse genes and NIGMS samples of interest.

The NIGMS Repository is seeking to expand their available resources, and we are looking to include in our collections samples that have characterized mutations in the genes in this list. If you or your collaborators would be interested in making biospecimens with mutations in one or more ACMG SF Genes available to the research community, please contact us at NIGMS@coriell.org.


* indicates that samples are not currently available from the catalog

Disease Phenotype

GeneReviews PMID for Phenotype

Gene and OMIM Number

Available Samples with Characterized Mutation Data

Genetic Variants in 1000 Genomes Project Samples
Hereditary breast and ovarian cancer 20301425BRCA1
113705
SamplesBrowse

BRCA2 
600185

SamplesBrowse

PALB2
610355

SamplesBrowse
Li-Fraumeni syndrome20301488TP53 
191170 
Browse
Peutz-Jeghers syndrome20301443

STK11 
602216 

Browse
Lynch syndrome20301390MLH1 
120436 
Browse
MSH2 
609309 
Browse
MSH6 
600678 
Browse
PMS2 
600259 
SamplesBrowse
Familial adenomatous polyposis20301519APC 
611731 
SamplesBrowse
MYH-associated polyposis; adenomas, multiple colorectal, FAP type 2; colorectal adenomatous polyposis, autosomal recessive, with pilomatricomas23035301MUTYH 
604933 
Browse
Juvenile polyposis20301642BMPR1A 
601299 
Browse
SMAD4 
600993 
SamplesBrowse
Von Hippel–Lindau syndrome20301636VHL 
608537 
Samples*  Browse
Multiple endocrine neoplasia type 120301710MEN1 
613733 
Samples Browse
Multiple endocrine neoplasia type 220301434 RET 
164761 
SamplesBrowse
Familial medullary thyroid cancer20301434RET 
164761
SamplesBrowse
PTEN hamartoma tumor syndrome20301661PTEN 
601728 
SamplesBrowse
Retinoblastoma20301625RB1 
614041 
SamplesBrowse
Hereditary paraganglioma-pheochromocytoma syndrome20301715SDHD 
602690 
Browse
SDHAF2 
613019 
Browse
SDHC 
602413 
Browse
SDHB 
185470 
Browse
MAX
154950
Browse
TMEM127
613403
Browse
Tuberous sclerosis complex20301399

TSC1 
605284 

SamplesBrowse

TSC2 
191092 

SamplesBrowse
WT1-related Wilms tumor20301471WT1 
607102 
SamplesBrowse
Neurofibromatosis type 220301380NF2 
607379 
SamplesBrowse
Ehlers-Danlos syndrome, vascular type20301667

COL3A1 
120180 

SamplesBrowse
Marfan syndrome, Loeys-Dietz syndromes, and familial thoracic aortic aneurysms and dissections

20301510

20301312

20301299

FBN1 
134797 

SamplesBrowse
TGFBR1 
190181 
SamplesBrowse
TGFBR2 
190182 
SamplesBrowse
SMAD3 
603109 
Browse
ACTA2 
102620 
Browse
MYH11 
160745 
Browse
Hypertrophic cardiomyopathy, dilated cardiomyopathy20301725

MYBPC3 
600958 

SamplesBrowse

MYH7 
160760 

SamplesBrowse

TNNT2 
191045 

Browse

TNNI3 
191044 

Browse

TPM1 
191010 

Browse

MYL3 
160790 

Browse

ACTC1 
102540 

Browse

PRKAG2 
602743 

Browse

GLA 
300644 

SamplesBrowse

MYL2 
160781 

SamplesBrowse
LMNA 
150330 
SamplesBrowse
FLNC
102565
SamplesBrowse
TTN
188840
SamplesBrowse

BAG3

603883

Browse

DES

125660

SamplesBrowse

RBM20

613171

Browse

TNNC1

191040

Browse
Catecholaminergic polymorphic ventricular tachycardia20301466RYR2 
180902 
Browse
CASQ2
114251
Browse
TRDN
603283
Browse
Arrhythmogenic right ventricular cardiomyopathy20301310PKP2 
602861 
Browse
DSP 
125647 
SamplesBrowse
DSC2 
125645 
Browse
TMEM43 
612048 
Browse
DSG2 
125671 
Browse
Romano-Ward long-QT syndrome types 1, 2, 3, 14, 15 and 16, Brugada syndrome20301308KCNQ1 
607542 
Browse
KCNH2 
152427 
SamplesBrowse
SCN5A 
600163 
SamplesBrowse

CALM1

114180

Browse

CALM2

114182

Browse

CALM3

114183

Browse
Familial hypercholesterolemia24404629LDLR 
606945 
SamplesBrowse
APOB 
107730 
SamplesBrowse
PCSK9 
607786 
Browse
Wilson disease20301685ATP7B 
606882 
SamplesBrowse
Ornithine transcarbamylase deficiency24006547OTC 
300461 
SamplesBrowse
Biotinidase deficiency20301497BTD
609019
Browse
Pompe Disease20301438GAA
606800
SamplesBrowse
Malignant hyperthermia susceptibility20301325RYR1 
180901 
SamplesBrowse
CACNA1S 
114208 
SamplesBrowse
Hereditary hemochromatosis20301613

HFE

613609

SamplesBrowse
Hereditary hemorrhagic telangiectasia20301525

ACVRL1

601284

Browse

ENG

131195

SamplesBrowse
Maturity-onset diabetes of the young29792621

HNF1A

142410

Browse
RPE65-related retinopathy31725251

RPE65

180069

Browse
Hereditary TTR amyloidosis33188616

TTR

176300

SamplesBrowse

Additional Resources:

*Note: this page has been updated to reflect ACMG SF v3.2 which included 8 additional genes to list of 73 genes from v3.0 (BAG3, DES, RBM20, TNNC1, TTR, CALM1, CALM2 and CALM3). This is an up-to-date version of the ACMG SF Genes webpage.