GM06987

GM06987 LCL from B-Lymphocyte

Description:

CEPH/UTAH PEDIGREE 1333
SNP500 PANEL

Affected:

No Data

Sex:

Female

Age:

No Data

Overview

Repository

NIGMS Human Genetic Cell Repository

Subcollection

CEPH
Repository Linkage Families
Pharmacogenetics

Biopsy Source

Peripheral vein

Cell Type

B-Lymphocyte

Tissue Type

Blood

Transformant

Epstein-Barr Virus

Sample Source

LCL from B-Lymphocyte

Race

White

Ethnicity

UTAH/MORMON

Family Member

Relation to Proband

mother

Confirmation

Clinical summary/Case history

Species

Homo sapiens

Common Name

Human

Remarks

Mother

Characterizations

IDENTIFICATION OF SPECIES OF ORIGIN

Species of Origin Confirmed by Nucleoside Phosphorylase, Glucose-6-Phosphate Dehydrogenase, and Lactate Dehydrogenase Isoenzyme Electrophoresis

GENE MAPPING & DOSAGE STUDIES - Y CHROMOSOME

PCR analysis of DNA from this cell culture gave a negative result with a primer for Yq11, DYS227.

Phenotypic Data

Remarks

Mother

Publications

Fairbanks DJ, Fairbanks AD, Ogden TH, Parker GJ, Maughan PJ, NANOGP8: evolution of a human-specific retro-oncogene G3 (Bethesda, Md)2:1447-57 2012

PubMed ID: 23173096

Tynan JA, Mahboubi P, Cagasan LL, van den Boom D, Ehrich M, Oeth P, Restriction enzyme-mediated enhanced detection of circulating cell-free fetal DNA in maternal plasma The Journal of molecular diagnostics : JMD13:382-9 2010

PubMed ID: 21704271

Bergen AW, Baccarelli A, McDaniel TK, Kuhn K, Pfeiffer R, Kakol J, Bender P, Jacobs K, Packer B, Chanock SJ, Yeager M, Cis sequence effects on gene expression BMC genomics8:296 2007

PubMed ID: 17727713

Miretti MM, Walsh EC, Ke X, Delgado M, Griffiths M, Hunt S, Morrison J, Whittaker P, Lander ES, Cardon LR, Bentley DR, Rioux JD, Beck S, Deloukas P, A high-resolution linkage-disequilibrium map of the human major histocompatibility complex and first generation of tag single-nucleotide polymorphisms. Am J Hum Genet76(4):634-46 2005

PubMed ID: 15747258

Bersaglieri T, Sabeti PC, Patterson N, Vanderploeg T, Schaffner SF, Drake JA, Rhodes M, Reich DE, Hirschhorn JN, Genetic signatures of strong recent positive selection at the lactase gene. Am J Hum Genet74(6):1111-20 2004

PubMed ID: 15114531

Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, Morley M, Spielman RS, Natural variation in human gene expression assessed in lymphoblastoid cells. Nat Genet33(3):422-5 2003

PubMed ID: 12567189

Haque KA, Pfeiffer RM, Beerman MB, Struewing JP, Chanock SJ, Bergen AW, Performance of high-throughput DNA quantification methods. BMC Biotechnol3(1):20 2003

PubMed ID: 14583097

Rutter JL, Smith AM, Dávila MR, Sigurdson AJ, Giusti RM, Pineda MA, Doody MM, Tucker MA, Greene MH, Zhang J, Struewing JP, Mutational analysis of the BRCA1-interacting genes ZNF350/ZBRK1 and BRIP1/BACH1 among BRCA1 and BRCA2-negative probands from breast-ovarian cancer families and among early-onset breast cancer cases and reference individuals Human mutation22:121-8 2003

PubMed ID: 12872252

Watts JA, Morley M, Burdick JT, Fiori JL, Ewens WJ, Spielman RS, Cheung VG, Gene expression phenotype in heterozygous carriers of ataxia telangiectasia. Am J Hum Genet71(4):791-800 2002

PubMed ID: 12226795

Luberto C, Yoo DS, Suidan HS, Bartoli GM, Hannun YA, Chen J, Iannone MA, Li MS, Taylor JD, Rivers P, Nelsen AJ, Slentz-Kesler KA, Roses A, Weiner MP, A microsphere-based assay for multiplexed single nucleotide polymorphism analysis using single base chain extension. Genome Res10:549-57 2000

PubMed ID: 10779497

Martin ER,Lai EH,Gilbert JR,Rogala AR,Afshari AJ,Riley J,Finch KL,Stevens JF,Livak KJ,Slotterbeck BD,Slifer SH,Warren LL,Conneally PM,Schmechel DE,Purvis I,Pericak-Vance MA,Roses AD,Vance J, SNPing away at complex diseases: analysis of single-nucleotide polymorphisms around APOE in alzheimer disease [In Process Citation] Am J Hum Genet67:383-94 2000

PubMed ID: 10869235

Bowman ED, Bromeke B, Lensing W, Shields PG, Apolipoprotein E allelic frequency in elderly smokers. Am J Med Genet76(1):32-6 1998

PubMed ID: 9508061

Brzustowicz LM, Gardner JP, Hopp L, Jeanclos E, Ott J, Yang XY, Fekete Z,Aviv A, Linkage analysis using platelet-activating factor Ca2+ response in transformed lymphoblasts. Hypertension29(1 Pt 2):158-64 1997

PubMed ID: 9039096

Abels S, Erdmann J, Nothen MM, Dinucleotide repeat polymorphism at the D18S365 locus. Hum Mol Genet2:1747 1993

PubMed ID: 8268941

Pata I, Metspalu A, A dinucleotide repeat polymorphism at the ribosomal protein S6 (RPS6) gene. Hum Mol Genet2:1749 1993

PubMed ID: 8268945

Goldman D, O'Brien SJ, Lucas-Derse S, Dean M, Linkage mapping of human polymorphic proteins identified by two-dimensional electrophoresis. Genomics11:875-84 1991

PubMed ID: 1686020

Greig GM, Parikh S, George J, Powers VE, Willard HF, Molecular cytogenetics of alpha satellite DNA from chromosome 12: fluorescence in situ hybridization and description of DNA and array length polymorphisms. Cytogenet Cell Genet56:144-8 1991

PubMed ID: 1675980

Greig GM, England SB, Bedford HM, Willard HF, Chromosome-specific alpha satellite DNA from the centromere of human chromosome 16. Am J Hum Genet45:862-72 1989

PubMed ID: 2573999

Modi WS, Levine MA, Seuanez HN, Dean M, O'Brien SJ, The human chromogranin A gene: chromosome assignment and RFLP analysis. Am J Hum Genet45:814-8 1989

PubMed ID: 2573279

Nicholls RD, Knoll JH, Glatt K, Hersh JH, Brewster TD, Graham JM Jr, Wurster-Hill D, Wharton R, Latt SA, Restriction fragment length polymorphisms within proximal 15q and their use in molecular cytogenetics and the Prader-Willi syndrome. Am J Med Genet33:66-77 1989

PubMed ID: 2568752

Board PG, Chapple R, Coggan M, Haplotypes of the coagulation factor XIII A subunit locus in normal and deficient subjects. Am J Hum Genet42:712-7 1988

PubMed ID: 2895980

Bufton L, Bruns GA, Magenis RE, Tomar D, Shaw D, Brook D, Litt M, Four restriction fragment length polymorphisms revealed by probes from a single cosmid map to chromosome 19. Am J Hum Genet38:447-60 1986

PubMed ID: 3010711

Buroker NE, Magenis RE, Weliky K, Bruns G, Litt M, Four restriction fragment length polymorphisms revealed by probes from a single cosmid map to human chromosome 12q. Hum Genet72:86-94 1986

PubMed ID: 3002956

White R, Leppert M, Bishop DT, Barker D, Berkowitz J, Brown C, Callahan P, Holm T, Jerominski L, Construction of linkage maps with DNA markers for human chromosomes. Nature313:101-5 1985

PubMed ID: 2981412