NA25393
DNA from Fibroblast
Description:
CHOROIDEREMIA; CHM
CHM GENE; CHM
Repository
|
NIGMS Human Genetic Cell Repository
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Subcollection |
Heritable Diseases PIGI Consented Sample |
Quantity |
10 µg |
Quantitation Method |
Please see our FAQ |
Biopsy Source
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Skin
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Cell Type
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Fibroblast
|
Tissue Type
|
Skin
|
Transformant
|
Untransformed
|
Sample Source
|
DNA from Fibroblast
|
Race
|
White
|
Country of Origin
|
USA
|
Family Member
|
1
|
Family History
|
Y
|
Relation to Proband
|
proband
|
Confirmation
|
Molecular characterization before cell line submission to CCR
|
ISCN
|
46,XY[19].arr(1-22)x2,(X,Y)x1
|
Species
|
Homo sapiens
|
Common Name
|
Human
|
Remarks
|
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PDL at Freeze |
6.77 |
Passage Frozen |
3 |
|
IDENTIFICATION OF SPECIES OF ORIGIN |
Species of Origin Confirmed by LINE assay |
|
Gene |
CHM |
Chromosomal Location |
Xq21.2 |
Allelic Variant 1 |
; CHOROIDEREMIA |
Identified Mutation |
c.189+1G>T |
|
Gene |
CHM |
Chromosomal Location |
Xq21.2 |
Allelic Variant 1 |
non-disease causing; CHOROIDEREMIA |
Identified Mutation |
ALA117ALA |
Remarks |
Clinically affected; end stage choroideremia; deteriorated vision in both eyes; severe night blindness; sensitivity to light; decreased visual fields; some loss of color vision; blunt fundus in both eyes; diffuse retinal atrophy; mottled pigmentation; nuclear sclerotic cataract (NSC) 1+ in both eyes; at 56 years of age, eye exam readings for left eye were: MD -31.96 DB (p<0.5%), PSD 2.37 DB (p<2%) and for right eye: MD -32.28 DB (p<0.5%), PSD 1.49 DB; at 57 years of age, foveal thickness measured OD 357, OS 373 and sub-retinal fluid temporal to fovea OS is stable compared to a year earlier, for left eye: MD -32.45 DB (p<0.5%), PSD 1.56 DB and no information on right eye; VC: 20/50-2 PH 20/NI, 20/200+1 PH 20/NI; MR: OD -3.25+1.50x165 20/NI; OS -375+1.25x85 20/NI; W: -3.75+1.25x125, -3.75+1.25x85; DNA sequencing revealed a novel hemizygous G>T nucleotide substitution at position +1 of intron 3 in the CHM gene which may cause aberrant splicing of the mRNA and is a probable highly penetrant disease-causing sequence variant: c.189+1 G>T (formerly reported as IVS3+1 G>T), and a non-disease-causing variant Ala117Ala GCA>GCG; assistive devices: glasses, cane; lymphoblast is GM25392; stem cell line is GM26650. |
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